pappso::cbor::mzcbor::SpectrumTube Class Reference

#include <spectrumtube.h>

Public Member Functions
	SpectrumTube ()
virtual	~SpectrumTube ()
const QString	push_back (QcborSpectrum &spectrum)
void	flush (pappso::cbor::CborStreamWriter *cbor_writer_p)
std::size_t	size () const

Private Member Functions
void	writeQcborSpectrumInBuffer (const QcborSpectrum &spectrum, const QString &old_native_id)

Private Attributes
std::size_t	m_size = 0
QTemporaryFile *	mpa_buffer = nullptr
pappso::cbor::CborStreamWriter *	mpa_bufferWriter = nullptr

Detailed Description

Todo

write docs

Definition at line 48 of file spectrumtube.h.

Constructor & Destructor Documentation

SpectrumTube()

pappso::cbor::mzcbor::SpectrumTube::SpectrumTube

(

)

Definition at line 43 of file spectrumtube.cpp.

{
  mpa_buffer = new QTemporaryFile();
  mpa_buffer->open();
  qDebug() << mpa_buffer->fileName();
  mpa_bufferWriter = new pappso::cbor::CborStreamWriter(mpa_buffer);
}

References mpa_buffer, and mpa_bufferWriter.

~SpectrumTube()

pappso::cbor::mzcbor::SpectrumTube::~SpectrumTube ( )

virtual

Definition at line 51 of file spectrumtube.cpp.

{
 
  if(mpa_buffer != nullptr)
    {
      delete mpa_buffer;
    }
  if(mpa_bufferWriter != nullptr)
    {
      delete mpa_bufferWriter;
    }
}

References mpa_buffer, and mpa_bufferWriter.

Member Function Documentation

flush()

void pappso::cbor::mzcbor::SpectrumTube::flush

(

pappso::cbor::CborStreamWriter *

cbor_writer_p

)

Definition at line 170 of file spectrumtube.cpp.

{
  mpa_buffer->close();
  mpa_buffer->open();
  while(!mpa_buffer->atEnd())
    {
      cbor_writer_p->device()->write(mpa_buffer->read(1000));
    }
}

References mpa_buffer.

Referenced by pappso::cbor::mzcbor::MzcborCopyReplaceBase::readSpectrumList().

push_back()

const QString pappso::cbor::mzcbor::SpectrumTube::push_back

(

QcborSpectrum &

spectrum

)

Definition at line 69 of file spectrumtube.cpp.

{
  qDebug() << m_size;
  std::size_t index = m_size;
 
  spectrum.setIndex(index);
 
  // replace scan number in native id
  const QString native_id(spectrum.getId());
  QString new_native_id;
  // controllerType=0 controllerNumber=1 scan=2995
  //
  QStringList native_id_list = native_id.split(" scan=");
  if(native_id_list.size() < 2)
    {
      new_native_id = QString("%1 index=%2").arg(native_id).arg(index);
    }
  else
    {
      new_native_id = QString("%1 scan=%2").arg(native_id_list[0]).arg(index + 1);
    }
 
  // spectrum.addUserParam();
 
  spectrum.setId(new_native_id);
 
  qDebug();
 
  writeQcborSpectrumInBuffer(spectrum, native_id);
  // qDebug() << mpa_buffer->data().length();
  m_size++;
  return native_id;
}

References pappso::cbor::mzcbor::QcborSpectrum::getId(), m_size, pappso::cbor::mzcbor::QcborSpectrum::setId(), pappso::cbor::mzcbor::QcborSpectrum::setIndex(), and writeQcborSpectrumInBuffer().

Referenced by pappso::cbor::mzcbor::MzcborCopyReplaceBase::processQcborSpectrum(), and pappso::cbor::mzcbor::MzcborPrecursorFinder::processQcborSpectrum().

size()

std::size_t pappso::cbor::mzcbor::SpectrumTube::size

(

)

const

Definition at line 64 of file spectrumtube.cpp.

{
  return m_size;
}

References m_size.

Referenced by pappso::cbor::mzcbor::MzcborCopyReplaceBase::readSpectrumList().

writeQcborSpectrumInBuffer()

void pappso::cbor::mzcbor::SpectrumTube::writeQcborSpectrumInBuffer ( const QcborSpectrum & spectrum, const QString & old_native_id )

private

Definition at line 104 of file spectrumtube.cpp.

{
 
  // "id": "controllerType=0 controllerNumber=1 scan=3001",
  // "index": 3000,
  // "defaultArrayLength": 235,
  // "cvParam": [],
  // "userParam": [
  //   {
  //     "name": "[PAPPSO]original spectrum native id",
  //     "type": "xsd:string",
  //     "value": old_native_id
  //   }
  // ],
  QCborMap new_user_param;
  new_user_param.insert(QString("name"), "[PAPPSO]original spectrum native id");
  new_user_param.insert(QString("type"), "xsd:string");
  new_user_param.insert(QString("value"), old_native_id);
  //"scanList": {},
  //"precursorList": {},
  //"binaryDataArray": []
  mpa_bufferWriter->startMap();
  bool write_user_param = false;
  for(auto it_cbor = spectrum.begin(); it_cbor != spectrum.end(); it_cbor++)
    {
      QString current_key = it_cbor.key().toString();
 
      if(write_user_param)
        {
          if(current_key == "userParam")
            {
              QCborArray user_param_array = it_cbor.value().toArray();
              user_param_array.append(new_user_param);
              mpa_bufferWriter->writeCborValue(it_cbor.key());
              mpa_bufferWriter->writeCborValue(user_param_array);
              continue;
            }
          else
            {
              mpa_bufferWriter->append("userParam");
              mpa_bufferWriter->startArray();
              mpa_bufferWriter->writeCborMap(new_user_param);
              mpa_bufferWriter->endArray();
            }
          write_user_param = false;
        }
 
      if(current_key == "cvParam")
        {
          // write cvParam
          mpa_bufferWriter->writeCborValue(it_cbor.key());
          mpa_bufferWriter->writeCborValue(it_cbor.value());
          write_user_param = true;
        }
      else
        {
          mpa_bufferWriter->writeCborValue(it_cbor.key());
          mpa_bufferWriter->writeCborValue(it_cbor.value());
        }
    }
  mpa_bufferWriter->endMap();
  // mpa_bufferWriter->writeCborMap(spectrum);
}

References mpa_bufferWriter.

Referenced by push_back().

Member Data Documentation

m_size

std::size_t pappso::cbor::mzcbor::SpectrumTube::m_size = 0

private

Definition at line 64 of file spectrumtube.h.

Referenced by push_back(), and size().

mpa_buffer

QTemporaryFile* pappso::cbor::mzcbor::SpectrumTube::mpa_buffer = nullptr

private

Definition at line 65 of file spectrumtube.h.

Referenced by SpectrumTube(), ~SpectrumTube(), and flush().

mpa_bufferWriter

pappso::cbor::CborStreamWriter* pappso::cbor::mzcbor::SpectrumTube::mpa_bufferWriter = nullptr

private

Definition at line 66 of file spectrumtube.h.

Referenced by SpectrumTube(), ~SpectrumTube(), and writeQcborSpectrumInBuffer().

---

The documentation for this class was generated from the following files:

• pappsomspp/core/processing/cbor/mzcbor/copyreplace/spectrumtube.h
• pappsomspp/core/processing/cbor/mzcbor/copyreplace/spectrumtube.cpp